seqfile = 
treefile = 
outfile = 
noisy = 9
verbose = 0
runmode = 0
icode = 0
fix_omega = 0
ncatG = 4
fix_alpha = 0
ndata = 1
clock = 0
seqtype = 2
aaRatefile = dat/wag.dat
fix_blength = 0
omega = 2
Mgene = 0
Small_Diff = .5e-6
getSE = 0
RateAncestor = 1
alpha = 0.5
fix_kappa = 0
model = 2
kappa = 2
CodonFreq = 2
aaDist = 0
cleandata = 1
Malpha = 1
